Note
Go to the end to download the full example code.
Henry#
This example illustrates how to setup a variable density groundwater flow and
transport model using the imod package and associated packages.
In overview, we’ll set the following steps:
Create a suitable 2d (x, z) grid.
Create a groundwater flow model, with variable density.
Create a solute transport model.
Combine these models into a single MODFLOW 6 simulation.
Write to modflow6 files.
Run the model.
Open the results back into xarray DataArrays.
Visualize the results.
We are simulating the Henry problem, although not the original one but the one outlined in the MODFLOW 6 manual (jupyter notebooks example 51). This is the modified Henry problem with half the inflow rate.
The domain is a vertically oriented two dimensional rectangle, which is 2 m long and 1 m high. Water flows in over the left boundary with a fixed rate, which is represented by a Well package. The right boundary is in direct contact with hydrostatic seawater with a density of 1025 kg m:sup:-3. This is represented by a General Head Boundary package.
We’ll start with the usual imports. As this is a simple (synthetic) structured model, we can make do with few packages.
import numpy as np
import pandas as pd
import xarray as xr
import imod
We’ll start by defining the (vertical) rectangular domain and the physical parameters of the model.
nlay = 40
nrow = 1
ncol = 80
shape = (nlay, nrow, ncol)
total_flux = 5.7024 # m3/d
k = 864.0 # m/d
porosity = 0.35
max_concentration = 35.0
min_concentration = 0.0
max_density = 1025.0
min_density = 1000.0
diffusion_coefficient = 0.57024
longitudinal_horizontal = 0.1
transversal_horizontal1 = 0.01
# Time
start_date = pd.to_datetime("2020-01-01")
duration = pd.to_timedelta("0.5d")
# Domain size
xmax = 2.0
xmin = 0.0
dx = (xmax - xmin) / ncol
zmin = 0.0
zmax = 1.0
dz = (zmax - zmin) / nlay
x = np.arange(xmin, xmax, dx) + 0.5 * dx
y = np.array([0.5])
layer = np.arange(1, 41, 1)
dy = -1.0
coords = {"layer": layer, "y": y, "x": x, "dy": dy, "dx": dx}
dims = ("layer", "y", "x")
idomain = xr.DataArray(np.ones(shape, dtype=int), coords=coords, dims=dims)
top = 1.0
bottom = xr.DataArray(
np.arange(zmin, zmax, dz)[::-1],
{"layer": layer},
("layer",),
)
C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py:64: Pandas4Warning: 'd' is deprecated and will be removed in a future version. Please use 'D' instead of 'd'.
duration = pd.to_timedelta("0.5d")
Now make the flow model. We’ll start with the non-boundary condition packages.
gwf_model = imod.mf6.GroundwaterFlowModel()
gwf_model["dis"] = imod.mf6.StructuredDiscretization(
top=top, bottom=bottom, idomain=idomain
)
gwf_model["npf"] = imod.mf6.NodePropertyFlow(
icelltype=0,
k=k,
)
gwf_model["sto"] = imod.mf6.SpecificStorage(
specific_storage=1.0e-4,
specific_yield=0.15,
transient=False,
convertible=0,
)
gwf_model["ic"] = imod.mf6.InitialConditions(start=0.0)
gwf_model["oc"] = imod.mf6.OutputControl(save_head="last", save_budget="last")
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 984, in _exec_and_get_memory
mem_max, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 94, in <module>
gwf_model = imod.mf6.GroundwaterFlowModel()
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 61, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Initializing the GroundwaterFlowModel package...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 984, in _exec_and_get_memory
mem_max, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 94, in <module>
gwf_model = imod.mf6.GroundwaterFlowModel()
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 64, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model_gwf.py", line 120, in __init__
self._validate_init_schemata_options(validate)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 179, in _validate_init_schemata_options
validate_with_error_message(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\common\utilities\schemata.py", line 132, in validate_with_error_message
errors = validate_func(schemata, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.model._validate_options for object GroundwaterFlowModel...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 984, in _exec_and_get_memory
mem_max, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 95, in <module>
gwf_model["dis"] = imod.mf6.StructuredDiscretization(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 61, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Initializing the StructuredDiscretization package...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 984, in _exec_and_get_memory
mem_max, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 95, in <module>
gwf_model["dis"] = imod.mf6.StructuredDiscretization(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 64, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\dis.py", line 125, in __init__
self._validate_init_schemata(validate)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\package.py", line 365, in _validate_init_schemata
validate_with_error_message(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\common\utilities\schemata.py", line 132, in validate_with_error_message
errors = validate_func(schemata, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\dis.py", line 168, in _validate
errors = super()._validate(schemata, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._validate for object StructuredDiscretization...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 984, in _exec_and_get_memory
mem_max, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 98, in <module>
gwf_model["npf"] = imod.mf6.NodePropertyFlow(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 61, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Initializing the NodePropertyFlow package...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 984, in _exec_and_get_memory
mem_max, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 98, in <module>
gwf_model["npf"] = imod.mf6.NodePropertyFlow(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 64, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\npf.py", line 423, in __init__
self._validate_init_schemata(validate)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\package.py", line 365, in _validate_init_schemata
validate_with_error_message(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\common\utilities\schemata.py", line 132, in validate_with_error_message
errors = validate_func(schemata, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\npf.py", line 455, in _validate
errors = super()._validate(schemata, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._validate for object NodePropertyFlow...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 984, in _exec_and_get_memory
mem_max, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 102, in <module>
gwf_model["sto"] = imod.mf6.SpecificStorage(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 61, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Initializing the SpecificStorage package...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 984, in _exec_and_get_memory
mem_max, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 102, in <module>
gwf_model["sto"] = imod.mf6.SpecificStorage(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 64, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\sto.py", line 187, in __init__
self._validate_init_schemata(validate)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\package.py", line 365, in _validate_init_schemata
validate_with_error_message(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\common\utilities\schemata.py", line 132, in validate_with_error_message
errors = validate_func(schemata, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._validate for object SpecificStorage...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 984, in _exec_and_get_memory
mem_max, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 108, in <module>
gwf_model["ic"] = imod.mf6.InitialConditions(start=0.0)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 61, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Initializing the InitialConditions package...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 984, in _exec_and_get_memory
mem_max, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 108, in <module>
gwf_model["ic"] = imod.mf6.InitialConditions(start=0.0)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 64, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\ic.py", line 75, in __init__
self._validate_init_schemata(validate)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\package.py", line 365, in _validate_init_schemata
validate_with_error_message(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\common\utilities\schemata.py", line 132, in validate_with_error_message
errors = validate_func(schemata, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._validate for object InitialConditions...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 984, in _exec_and_get_memory
mem_max, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 109, in <module>
gwf_model["oc"] = imod.mf6.OutputControl(save_head="last", save_budget="last")
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 61, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Initializing the OutputControl package...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 984, in _exec_and_get_memory
mem_max, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 109, in <module>
gwf_model["oc"] = imod.mf6.OutputControl(save_head="last", save_budget="last")
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 64, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\oc.py", line 114, in __init__
self._validate_init_schemata(validate)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\package.py", line 365, in _validate_init_schemata
validate_with_error_message(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\common\utilities\schemata.py", line 132, in validate_with_error_message
errors = validate_func(schemata, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._validate for object OutputControl...'
Arguments: ()
Now let’s make the constant head boundary condition.
ghb_head = xr.ones_like(idomain, dtype=float)
ghb_head[:, :, :-1] = np.nan
ghb_conc = xr.full_like(idomain, max_concentration, dtype=float)
ghb_conc[:, :, :-1] = np.nan
ghb_conc = ghb_conc.expand_dims(species=["salinity"])
conductance = xr.full_like(idomain, 864.0 * 2.0, dtype=float)
conductance[:, :, :-1] = np.nan
gwf_model["right_boundary"] = imod.mf6.GeneralHeadBoundary(
head=ghb_head,
conductance=conductance,
concentration=ghb_conc,
concentration_boundary_type="AUX",
print_input=True,
print_flows=True,
save_flows=True,
)
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 984, in _exec_and_get_memory
mem_max, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 124, in <module>
gwf_model["right_boundary"] = imod.mf6.GeneralHeadBoundary(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 61, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Initializing the GeneralHeadBoundary package...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 984, in _exec_and_get_memory
mem_max, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 124, in <module>
gwf_model["right_boundary"] = imod.mf6.GeneralHeadBoundary(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 64, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\ghb.py", line 170, in __init__
self._validate_init_schemata(validate)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\package.py", line 365, in _validate_init_schemata
validate_with_error_message(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\common\utilities\schemata.py", line 132, in validate_with_error_message
errors = validate_func(schemata, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\ghb.py", line 175, in _validate
errors = super()._validate(schemata, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._validate for object GeneralHeadBoundary...'
Arguments: ()
… and the constant flux condition.
from imod.prepare import create_layered_top
screen_top = create_layered_top(bottom, top)
flux_concentration = xr.DataArray(
data=np.full((1, nlay), min_concentration),
dims=["species", "index"],
coords={"species": ["salinity"], "index": layer},
)
gwf_model["left_boundary"] = imod.mf6.Well(
x=np.full_like(layer, xmin, dtype=float),
y=np.full_like(layer, y[0], dtype=float),
screen_top=screen_top.values,
screen_bottom=bottom.values,
rate=np.full_like(layer, 0.5 * (total_flux / nlay), dtype=float),
concentration=flux_concentration,
concentration_boundary_type="AUX",
minimum_thickness=0.002,
)
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 984, in _exec_and_get_memory
mem_max, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 146, in <module>
gwf_model["left_boundary"] = imod.mf6.Well(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 61, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Initializing the Well package...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 984, in _exec_and_get_memory
mem_max, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 146, in <module>
gwf_model["left_boundary"] = imod.mf6.Well(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 64, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\wel.py", line 958, in __init__
self._validate_init_schemata(validate)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\package.py", line 365, in _validate_init_schemata
validate_with_error_message(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\common\utilities\schemata.py", line 132, in validate_with_error_message
errors = validate_func(schemata, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.wel._validate for object Well...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 984, in _exec_and_get_memory
mem_max, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 146, in <module>
gwf_model["left_boundary"] = imod.mf6.Well(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 64, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\wel.py", line 958, in __init__
self._validate_init_schemata(validate)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\package.py", line 365, in _validate_init_schemata
validate_with_error_message(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\common\utilities\schemata.py", line 132, in validate_with_error_message
errors = validate_func(schemata, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\wel.py", line 1111, in _validate
return Package._validate(self, schemata, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._validate for object Well...'
Arguments: ()
Since we are solving a variable density problem, we need to add the buoyancy package. It will use the species “salinity” that we are simulating with a transport model defined below.
slope = (max_density - min_density) / (max_concentration - min_concentration)
gwf_model["buoyancy"] = imod.mf6.Buoyancy(
reference_density=min_density,
modelname=["transport"],
reference_concentration=[min_concentration],
density_concentration_slope=[slope],
species=["salinity"],
)
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 984, in _exec_and_get_memory
mem_max, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 163, in <module>
gwf_model["buoyancy"] = imod.mf6.Buoyancy(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 61, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Initializing the Buoyancy package...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 984, in _exec_and_get_memory
mem_max, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 163, in <module>
gwf_model["buoyancy"] = imod.mf6.Buoyancy(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 64, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\buy.py", line 113, in __init__
self._validate_init_schemata(validate)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\package.py", line 365, in _validate_init_schemata
validate_with_error_message(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\common\utilities\schemata.py", line 132, in validate_with_error_message
errors = validate_func(schemata, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._validate for object Buoyancy...'
Arguments: ()
Now let’s make the transport model. It contains the standard packages of storage, dispersion and advection as well as initial condiations and output control. Sinks and sources are automatically determined based on packages provided in the flow model.
gwt_model = imod.mf6.GroundwaterTransportModel()
gwt_model["ssm"] = imod.mf6.SourceSinkMixing.from_flow_model(gwf_model, "salinity")
gwt_model["adv"] = imod.mf6.AdvectionTVD()
gwt_model["dsp"] = imod.mf6.Dispersion(
diffusion_coefficient=0.57024,
longitudinal_horizontal=0.1,
transversal_horizontal1=0.01,
xt3d_off=False,
xt3d_rhs=False,
)
gwt_model["mst"] = imod.mf6.MobileStorageTransfer(
porosity=porosity,
)
gwt_model["ic"] = imod.mf6.InitialConditions(start=max_concentration)
gwt_model["oc"] = imod.mf6.OutputControl(save_concentration="last", save_budget="last")
gwt_model["dis"] = gwf_model["dis"]
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 984, in _exec_and_get_memory
mem_max, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 177, in <module>
gwt_model = imod.mf6.GroundwaterTransportModel()
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 61, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Initializing the GroundwaterTransportModel package...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 984, in _exec_and_get_memory
mem_max, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 177, in <module>
gwt_model = imod.mf6.GroundwaterTransportModel()
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 64, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model_gwt.py", line 65, in __init__
self._validate_init_schemata_options(validate)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 179, in _validate_init_schemata_options
validate_with_error_message(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\common\utilities\schemata.py", line 132, in validate_with_error_message
errors = validate_func(schemata, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.model._validate_options for object GroundwaterTransportModel...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 984, in _exec_and_get_memory
mem_max, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 178, in <module>
gwt_model["ssm"] = imod.mf6.SourceSinkMixing.from_flow_model(gwf_model, "salinity")
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\ssm.py", line 202, in from_flow_model
return SourceSinkMixing(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 61, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Initializing the SourceSinkMixing package...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 984, in _exec_and_get_memory
mem_max, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 178, in <module>
gwt_model["ssm"] = imod.mf6.SourceSinkMixing.from_flow_model(gwf_model, "salinity")
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\ssm.py", line 202, in from_flow_model
return SourceSinkMixing(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 64, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\ssm.py", line 88, in __init__
self._validate_init_schemata(validate)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\package.py", line 365, in _validate_init_schemata
validate_with_error_message(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\common\utilities\schemata.py", line 132, in validate_with_error_message
errors = validate_func(schemata, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._validate for object SourceSinkMixing...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 984, in _exec_and_get_memory
mem_max, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 179, in <module>
gwt_model["adv"] = imod.mf6.AdvectionTVD()
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\adv.py", line 43, in __init__
self._validate_init_schemata(validate)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\package.py", line 365, in _validate_init_schemata
validate_with_error_message(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\common\utilities\schemata.py", line 132, in validate_with_error_message
errors = validate_func(schemata, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._validate for object AdvectionTVD...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 984, in _exec_and_get_memory
mem_max, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 180, in <module>
gwt_model["dsp"] = imod.mf6.Dispersion(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 61, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Initializing the Dispersion package...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 984, in _exec_and_get_memory
mem_max, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 180, in <module>
gwt_model["dsp"] = imod.mf6.Dispersion(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 64, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\dsp.py", line 181, in __init__
self._validate_init_schemata(validate)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\package.py", line 365, in _validate_init_schemata
validate_with_error_message(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\common\utilities\schemata.py", line 132, in validate_with_error_message
errors = validate_func(schemata, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\dsp.py", line 186, in _validate
errors = super()._validate(schemata, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._validate for object Dispersion...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 984, in _exec_and_get_memory
mem_max, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 188, in <module>
gwt_model["mst"] = imod.mf6.MobileStorageTransfer(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 61, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Initializing the MobileStorageTransfer package...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 984, in _exec_and_get_memory
mem_max, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 188, in <module>
gwt_model["mst"] = imod.mf6.MobileStorageTransfer(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 64, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\mst.py", line 134, in __init__
self._validate_init_schemata(validate)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\package.py", line 365, in _validate_init_schemata
validate_with_error_message(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\common\utilities\schemata.py", line 132, in validate_with_error_message
errors = validate_func(schemata, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._validate for object MobileStorageTransfer...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 984, in _exec_and_get_memory
mem_max, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 191, in <module>
gwt_model["ic"] = imod.mf6.InitialConditions(start=max_concentration)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 61, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Initializing the InitialConditions package...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 984, in _exec_and_get_memory
mem_max, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 191, in <module>
gwt_model["ic"] = imod.mf6.InitialConditions(start=max_concentration)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 64, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\ic.py", line 75, in __init__
self._validate_init_schemata(validate)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\package.py", line 365, in _validate_init_schemata
validate_with_error_message(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\common\utilities\schemata.py", line 132, in validate_with_error_message
errors = validate_func(schemata, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._validate for object InitialConditions...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 984, in _exec_and_get_memory
mem_max, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 192, in <module>
gwt_model["oc"] = imod.mf6.OutputControl(save_concentration="last", save_budget="last")
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 61, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Initializing the OutputControl package...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 984, in _exec_and_get_memory
mem_max, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 192, in <module>
gwt_model["oc"] = imod.mf6.OutputControl(save_concentration="last", save_budget="last")
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 64, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\oc.py", line 114, in __init__
self._validate_init_schemata(validate)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\package.py", line 365, in _validate_init_schemata
validate_with_error_message(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\common\utilities\schemata.py", line 132, in validate_with_error_message
errors = validate_func(schemata, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._validate for object OutputControl...'
Arguments: ()
Now let’s define a simulation using the flow and transport models.
# Attach it to a simulation
simulation = imod.mf6.Modflow6Simulation("henry")
simulation["flow"] = gwf_model
simulation["transport"] = gwt_model
Define solver settings. We need to define separate solutions for the flow and transport models. In this case, we’ll use the same settings, but generally convergence settings should differ: the transport model has very different units from the flow model.
simulation["flow_solver"] = imod.mf6.Solution(
modelnames=["flow"],
print_option="summary",
outer_dvclose=1.0e-6,
outer_maximum=500,
under_relaxation=None,
inner_dvclose=1.0e-6,
inner_rclose=1.0e-10,
inner_maximum=100,
linear_acceleration="bicgstab",
scaling_method=None,
reordering_method=None,
relaxation_factor=0.97,
)
simulation["transport_solver"] = imod.mf6.Solution(
modelnames=["transport"],
print_option="summary",
outer_dvclose=1.0e-6,
outer_maximum=500,
under_relaxation=None,
inner_dvclose=1.0e-6,
inner_rclose=1.0e-10,
inner_maximum=100,
linear_acceleration="bicgstab",
scaling_method=None,
reordering_method=None,
relaxation_factor=0.97,
)
# Collect time discretization
times = [start_date, start_date + duration]
simulation.create_time_discretization(additional_times=times)
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 966, in _exec_and_get_memory
mem_body, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 210, in <module>
simulation["flow_solver"] = imod.mf6.Solution(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 61, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Initializing the Solution package...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 966, in _exec_and_get_memory
mem_body, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 210, in <module>
simulation["flow_solver"] = imod.mf6.Solution(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 64, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\ims.py", line 451, in __init__
self._validate_init_schemata(validate)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\package.py", line 365, in _validate_init_schemata
validate_with_error_message(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\common\utilities\schemata.py", line 132, in validate_with_error_message
errors = validate_func(schemata, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._validate for object Solution...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 966, in _exec_and_get_memory
mem_body, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 224, in <module>
simulation["transport_solver"] = imod.mf6.Solution(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 61, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Initializing the Solution package...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 966, in _exec_and_get_memory
mem_body, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 224, in <module>
simulation["transport_solver"] = imod.mf6.Solution(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 64, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\ims.py", line 451, in __init__
self._validate_init_schemata(validate)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\package.py", line 365, in _validate_init_schemata
validate_with_error_message(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\common\utilities\schemata.py", line 132, in validate_with_error_message
errors = validate_func(schemata, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._validate for object Solution...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 240, in <module>
simulation.create_time_discretization(additional_times=times)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.simulation.create_time_discretization for object Modflow6Simulation...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 240, in <module>
simulation.create_time_discretization(additional_times=times)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 249, in create_time_discretization
self["time_discretization"] = imod.mf6.TimeDiscretization(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 61, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Initializing the TimeDiscretization package...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 240, in <module>
simulation.create_time_discretization(additional_times=times)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 249, in create_time_discretization
self["time_discretization"] = imod.mf6.TimeDiscretization(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 64, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\timedis.py", line 74, in __init__
self._validate_init_schemata(validate)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\package.py", line 365, in _validate_init_schemata
validate_with_error_message(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\common\utilities\schemata.py", line 132, in validate_with_error_message
errors = validate_func(schemata, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._validate for object TimeDiscretization...'
Arguments: ()
Increase the number of time steps for the single stress period:
simulation["time_discretization"]["n_timesteps"] = 500
We’ll create a new directory in which we will write and run the model.
modeldir = imod.util.temporary_directory()
simulation.write(modeldir, binary=False)
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.simulation.write for object Modflow6Simulation...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 353, in write
if gwfgwt_exchanges := self._generate_gwfgwt_exchanges():
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 1683, in _generate_gwfgwt_exchanges
exchanges.append(GWFGWT(flow_name, transport_model_name))
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 61, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Initializing the GWFGWT package...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.model._write for object GroundwaterFlowModel...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 546, in _write
model_status_info = self.validate(modelname, validate_context)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model_gwf.py", line 192, in validate
return super().validate(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.model.validate for object GroundwaterFlowModel...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 546, in _write
model_status_info = self.validate(modelname, validate_context)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model_gwf.py", line 192, in validate
return super().validate(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 398, in validate
option_errors = self._validate_options(self._init_schemata)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.model._validate_options for object GroundwaterFlowModel...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 546, in _write
model_status_info = self.validate(modelname, validate_context)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model_gwf.py", line 192, in validate
return super().validate(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 415, in validate
pkg_errors = pkg._validate(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\dis.py", line 168, in _validate
errors = super()._validate(schemata, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._validate for object StructuredDiscretization...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 546, in _write
model_status_info = self.validate(modelname, validate_context)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model_gwf.py", line 192, in validate
return super().validate(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 415, in validate
pkg_errors = pkg._validate(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\npf.py", line 455, in _validate
errors = super()._validate(schemata, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._validate for object NodePropertyFlow...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 546, in _write
model_status_info = self.validate(modelname, validate_context)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model_gwf.py", line 192, in validate
return super().validate(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 415, in validate
pkg_errors = pkg._validate(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._validate for object SpecificStorage...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 546, in _write
model_status_info = self.validate(modelname, validate_context)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model_gwf.py", line 192, in validate
return super().validate(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 415, in validate
pkg_errors = pkg._validate(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._validate for object InitialConditions...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 546, in _write
model_status_info = self.validate(modelname, validate_context)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model_gwf.py", line 192, in validate
return super().validate(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 415, in validate
pkg_errors = pkg._validate(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._validate for object OutputControl...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 546, in _write
model_status_info = self.validate(modelname, validate_context)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model_gwf.py", line 192, in validate
return super().validate(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 415, in validate
pkg_errors = pkg._validate(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\ghb.py", line 175, in _validate
errors = super()._validate(schemata, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._validate for object GeneralHeadBoundary...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 546, in _write
model_status_info = self.validate(modelname, validate_context)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model_gwf.py", line 192, in validate
return super().validate(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 415, in validate
pkg_errors = pkg._validate(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.wel._validate for object Well...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 546, in _write
model_status_info = self.validate(modelname, validate_context)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model_gwf.py", line 192, in validate
return super().validate(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 415, in validate
pkg_errors = pkg._validate(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\wel.py", line 1111, in _validate
return Package._validate(self, schemata, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._validate for object Well...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 546, in _write
model_status_info = self.validate(modelname, validate_context)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model_gwf.py", line 192, in validate
return super().validate(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 415, in validate
pkg_errors = pkg._validate(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._validate for object Buoyancy...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 574, in _write
pkg._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._write for object StructuredDiscretization...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 574, in _write
pkg._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._write for object NodePropertyFlow...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 574, in _write
pkg._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._write for object SpecificStorage...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 574, in _write
pkg._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._write for object InitialConditions...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 574, in _write
pkg._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\oc.py", line 194, in _write
super()._write(pkgname, globaltimes, write_context)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._write for object OutputControl...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 574, in _write
pkg._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\boundary_condition.py", line 297, in _write
super()._write(pkgname, globaltimes, write_context)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._write for object GeneralHeadBoundary...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 565, in _write
mf6_well_pkg = self._prepare_wel_for_mf6(pkg_name, validate_context)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.model._prepare_wel_for_mf6 for object GroundwaterFlowModel...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 565, in _write
mf6_well_pkg = self._prepare_wel_for_mf6(pkg_name, validate_context)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 476, in _prepare_wel_for_mf6
return pkg._to_mf6_pkg(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\wel.py", line 505, in _to_mf6_pkg
errors = self._validate(self._write_schemata)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.wel._validate for object Well...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 565, in _write
mf6_well_pkg = self._prepare_wel_for_mf6(pkg_name, validate_context)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 476, in _prepare_wel_for_mf6
return pkg._to_mf6_pkg(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\wel.py", line 505, in _to_mf6_pkg
errors = self._validate(self._write_schemata)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\wel.py", line 1111, in _validate
return Package._validate(self, schemata, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._validate for object Well...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 565, in _write
mf6_well_pkg = self._prepare_wel_for_mf6(pkg_name, validate_context)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 476, in _prepare_wel_for_mf6
return pkg._to_mf6_pkg(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\wel.py", line 552, in _to_mf6_pkg
return Mf6Wel(**data_vars_dict) # type: ignore[arg-type]
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\mf6_wel_adapter.py", line 163, in __init__
self._validate_init_schemata(validate)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\package.py", line 365, in _validate_init_schemata
validate_with_error_message(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\common\utilities\schemata.py", line 132, in validate_with_error_message
errors = validate_func(schemata, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._validate for object Mf6Wel...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 566, in _write
mf6_well_pkg._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\boundary_condition.py", line 297, in _write
super()._write(pkgname, globaltimes, write_context)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._write for object Mf6Wel...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 574, in _write
pkg._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._write for object Buoyancy...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.model._write for object GroundwaterTransportModel...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 546, in _write
model_status_info = self.validate(modelname, validate_context)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.model.validate for object GroundwaterTransportModel...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 546, in _write
model_status_info = self.validate(modelname, validate_context)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 398, in validate
option_errors = self._validate_options(self._init_schemata)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.model._validate_options for object GroundwaterTransportModel...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 546, in _write
model_status_info = self.validate(modelname, validate_context)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 415, in validate
pkg_errors = pkg._validate(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._validate for object SourceSinkMixing...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 546, in _write
model_status_info = self.validate(modelname, validate_context)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 415, in validate
pkg_errors = pkg._validate(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\dsp.py", line 186, in _validate
errors = super()._validate(schemata, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._validate for object Dispersion...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 546, in _write
model_status_info = self.validate(modelname, validate_context)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 415, in validate
pkg_errors = pkg._validate(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._validate for object MobileStorageTransfer...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 546, in _write
model_status_info = self.validate(modelname, validate_context)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 415, in validate
pkg_errors = pkg._validate(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._validate for object InitialConditions...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 546, in _write
model_status_info = self.validate(modelname, validate_context)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 415, in validate
pkg_errors = pkg._validate(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._validate for object OutputControl...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 546, in _write
model_status_info = self.validate(modelname, validate_context)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 415, in validate
pkg_errors = pkg._validate(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\dis.py", line 168, in _validate
errors = super()._validate(schemata, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._validate for object StructuredDiscretization...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 574, in _write
pkg._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\boundary_condition.py", line 297, in _write
super()._write(pkgname, globaltimes, write_context)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._write for object SourceSinkMixing...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 574, in _write
pkg._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._write for object AdvectionTVD...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 574, in _write
pkg._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._write for object Dispersion...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 574, in _write
pkg._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._write for object MobileStorageTransfer...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 574, in _write
pkg._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._write for object InitialConditions...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 574, in _write
pkg._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\oc.py", line 194, in _write
super()._write(pkgname, globaltimes, write_context)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._write for object OutputControl...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 380, in write
value._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\model.py", line 574, in _write
pkg._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._write for object StructuredDiscretization...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 395, in write
value._write(key, globaltimes, pkg_write_context)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._write for object Solution...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 395, in write
value._write(key, globaltimes, pkg_write_context)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._write for object Solution...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 249, in <module>
simulation.write(modeldir, binary=False)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 32, in wrapper
return_value = fun(*args, **kwargs)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\mf6\simulation.py", line 399, in write
exchange._write(
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.package._write for object GWFGWT...'
Arguments: ()
Run the model#
This takes about 20 seconds.
Note
The following lines assume the mf6 executable is available on your PATH.
The MODFLOW 6 examples introduction shortly
describes how to add it to yours.
simulation.run()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 976, in _exec_and_get_memory
mem_last, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 263, in <module>
simulation.run()
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.simulation.run for object Modflow6Simulation...'
Arguments: ()
Open the results#
We’ll open the head and concentration files.
head = simulation.open_head()
conc = simulation.open_concentration()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 984, in _exec_and_get_memory
mem_max, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 271, in <module>
head = simulation.open_head()
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.simulation.open_head for object Modflow6Simulation...'
Arguments: ()
--- Logging error ---
Traceback (most recent call last):
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\logging\__init__.py", line 1154, in emit
stream.write(msg + self.terminator)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
ValueError: I/O operation on closed file.
Call stack:
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Scripts\sphinx-build-script.py", line 10, in <module>
sys.exit(main())
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 491, in main
return make_mode.run_make_mode(argv[1:])
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 223, in run_make_mode
return make.run_generic_build(builder_name)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\make_mode.py", line 206, in run_generic_build
return build_main(args + self.opts)
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\cmd\build.py", line 414, in build_main
app = Sphinx(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 340, in __init__
self._init_builder()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\application.py", line 430, in _init_builder
self.events.emit('builder-inited')
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx\events.py", line 441, in emit
results.append(listener.handler(self._app, *args))
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_gallery.py", line 788, in generate_gallery_rst
) = generate_dir_rst(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 679, in generate_dir_rst
results = parallel(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 680, in <genexpr>
p_fun(fname, target_dir, src_dir, gallery_conf) for fname in iterator
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1520, in generate_file_rst
output_blocks, time_elapsed = execute_script(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1321, in execute_script
execute_code_block(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1170, in execute_code_block
is_last_expr, mem_max = _exec_and_get_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 984, in _exec_and_get_memory
mem_max, _ = call_memory(
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 1895, in _sg_call_memory_noop
return 0.0, func()
File "C:\pixi_envs\imod-python-1825887385235446013\envs\default\Lib\site-packages\sphinx_gallery\gen_rst.py", line 891, in __call__
exec(self.code, self.fake_main.__dict__)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\examples\mf6\Henry.py", line 273, in <module>
conc = simulation.open_concentration()
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\logging_decorators.py", line 29, in wrapper
logger.log(loglevel=start_level, message=start_message, additional_depth=2)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\ilogger.py", line 94, in log
self.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\_loggerholder.py", line 56, in info
self.instance.info(message, additional_depth)
File "C:\buildagent\work\4b9080cbb3354582\imod-python\imod\logging\pythonlogger.py", line 52, in info
self.logger.info(message, stacklevel=_stack_level(additional_depth))
Message: 'Beginning execution of imod.mf6.simulation.open_concentration for object Modflow6Simulation...'
Arguments: ()
Visualize the results#
head.isel(y=0, time=-1).plot.contourf(yincrease=False)
<matplotlib.contour.QuadContourSet object at 0x000001466B3B1D30>
We can check the concentration to see that a fresh-saline interface has been formed:
conc.isel(y=0, time=-1).plot.contourf(yincrease=False, cmap="RdYlBu_r")
<matplotlib.contour.QuadContourSet object at 0x000001466DA98B90>
Total running time of the script: (0 minutes 39.216 seconds)